| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 701 | Characterization of ancient whole-genome duplications from genomic and transcriptomic data: a machine learning approach
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Sutherland, Brittany; Tiley, George; Barker, Michael. | |
| 519 | Characterization of Genes involved in Producing Anti-Cancer Compounds in the Euphorbia schimperiTranscriptome
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Alqahtani, Aldanah; Jansen, Robert. | |
| 558 | Canceled Characterization of three chloroplast genomes of Birthwort family (Aristolochiaceae) and insights into diverse genome structure and rearrangement in Asarum
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Gil, Hee-Young; Ha, Young-Ho; Choi, Kyung; Kim, Dong-Kap. | Aristolochiaceae
Asarum
Aristolochia
IR expansion
repetitive DNA sequences |
| 721 | Canceled Co-option and carnivory in the Caryophyllales
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Drummond, Chloe Pak; Bocklund, Kylie; Lan, Tianying; Tan, Qiao Wen; Fukushima, Kenji; Rajaraman, Sitaram; Salojärvi, Jarkko; Albert, Victor; Renner, Tanya. | carnivory
comparative genomics
Transcriptomics
Caryophyllales |
| 654 | Comparative genomics of ecologically diverse Andropogoneae species
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Deb, Sontosh; Romay, Cinta; Rees, Evan; Song, Baoxing; LePak, Nick; Pasquet, Remy; Buckler, Edward; McKain, Michael; McKain, Michael. | Vossia
Maize
genomics
polyploidy
Synteny |
| 690 | Comparative phylogenomic and structural analyses of complete plastomes of the most basal lineage Proto-Araceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Kim, Seon-Hee; Maki, Masayuki; Lepschi, Brendan; Kim, Seung-Chul. | Comparative phylogenomics
Araceae
Proto-Araceae
Gymnostachydoideae
Orontioideae
Intercontinental disjunct distribution
plastome |
| 458 | Comparative Transcriptomics of Repeated Reticulate Evolution in the Genus Cuscuta (Convolvulaceae)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Frangione, Erika; Stefanović, Saša. | Transcriptome
hybrid
Polyploid
Next Generation Sequencing
Cuscuta |
| 816 | Canceled Conserved alternative splicing across rapidly evolving taxa
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Catlin, Nathan; Wing, Rod A.; Barbazuk, W. Brad. | Alternative splicing
Oryza
rice
splice
splicing |
| 704 | Differential Gene Expression as a Tool for Assessing Homology among Extrafloral Nectaries in Passiflora L. (Passifloraceae)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Maynord, Silas; Krosnick, Shawn; Hearn, David. | Homology
Extrafloral Nectaries
Passiflora
Transcriptomics |
| 278 | Diverse Sex Chromosomes in the Salicaceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Olson, Matt; Sanderson, Brian; Hu, Nan; Guo, Minghao; Feng, Guanqiao; DiFazio, Stephen. | Sex Chromosomes
Salicaceae
Dioecy |
| 1011 | Elucidating evolution of specialized metabolism in the mint family (Lamiaceae)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Godden, Grant; Soltis, Pamela; Soltis, Douglas; Consortium, Mint Evolutionary Genomics. | Lamiaceae
specialized metabolism
genomes
transcriptomes
Gene duplication
polyploidy
monoterpenes
iridoids
sesquiterpenes |
| 426 | Evaluating the genetic basis of morphological variation in the floral nectar spurs of Aquilegia
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Liu, Jasen; Ballerini, Evangeline S.; Hodges, Scott. | genetics
floral evolution
floral traits
development
aquilegia |
| 1054 | Canceled Evolutionary dynamics of long intergenic noncoding RNA: temporal shifts of diversification and conservation across the Angiosperms
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Adams, Keith. | genomics
non-coding RNAs
Genome Evolution
Molecular Evolution
Whole genome duplication
polyploidy
Gene Expression |
| 161 | Evolution of Resistance Genes in Wheat (Triticum aestivum L.) and its Relatives
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Purintun, Jordan; Andersen, Ethan; Neupane, Surendra; Nepal, Madhav. | Plant immunity
Disease resistance
NBS-LRRs
Coiled coiled (CC)
CNL, TNL and RNL |
| 499 | Exploring the evolutionary history of the CUP-SHAPED COTYLEDON (CUC) gene family in the honeysuckles (Lonicera, Caprifoliaceae) and relatives
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Lee, Aaron; Rahman-Vyas, Hiba; Walker, Joseph; Donoghue, Michael; Smith, Stephen; Howarth, Dianella; Clement, Wendy. | gene phylogeny
Asterids
genomics
Dipsacales
transcriptomes
Genome skimming
Gene duplication |
| 357 | Fluctuation in size and content of mitochondrial genomes across four subfamilies of Fabaceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Choi, In-Su; Schwarz, Erika; Ruhlman, Tracey; Jansen, Robert. | Legumes
evolution
mt DNA
IGT
HGT |
| 677 | Genomic consequences of UV sex chromosomes
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Carey, Sarah; McDaniel, Stuart. | moss
Sex Chromosomes
Ceratodon purpureus |
| 343 | Highly accelerated rates of genomic rearrangements and nucleotide substitutions in plastid genomes of Passiflora subgenus Decaloba
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Shrestha, Bikash; Weng, Mao-Lun; Theriot, Edward; Gilbert, Lawerence; Ruhlman, Tracey; Krosnick, Shawn; Jansen, Robert. | Passifloraceae
IR expansion/contraction
plastid-encoded RNA polymerase
inversion
substitution rate analyses |
| 162 | Identification and Characterization of Mitogen-Activated Protein Kinase Kinase Kinase (MKKK) Genes in Sunflower (Helianthus annuus L.)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Neupane, Surendra; Schweitzer, Sara; Kaluwahandi, Shakila; Bush, Charles; DuBray, Candy; Nepal, Madhav. | Abiotic Stress
Cellular signaling
Protein kinase
MAPKKK cascade
Sunflower MAPKKKs |
| 201 | Identification of Conserved Regulatory Modules in Dry and Fleshy Fruit Development
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Rajewski, Alex; Maheepala, Dinusha; Henry, Ashley; Elkins, Kevan; Litt, Amy. | Solanaceae
Tobacco
Tomato
Transcriptome
Transcription factor
evolution
Fruit Development |
| 980 | In search of the regulatory basis of crassulacean acid metabolism (CAM): a comparative genomics approach in three species of Yucca L
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Field, Richard D; Heyduk, Karolina; Leebens-Mack, Jim. | genomics
photosynthesis
Gene Expression
Chromatin Structure |
| 967 | Isolation and Characterization of some African Yam Bean (Sphenostylis sternocarpa Hochst ex. A. Rich Harms) fungal endophytes
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Kehinde, Iyabode; Oyekanmi, Joshua. | fungal endophyte
African Yam Bean
Internal Transcribed Spacer |
| 404 | Lost and Found: Return of the inverted repeat in the legume clade defined by its absence
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Ruhlman, Tracey A; Choi, In-Su; Jansen, Robert. | plastome
recombination
inverted repeat |
| 417 | Misconceptions about Plastome Organization and Evolution
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Jansen, Robert; Jansen, Robert; Ruhlman, Tracey; Goncalves, Deise. | plastome
recombination
transcription
phylogenomics |
| 283 | Multiple Independent Whole Genome Duplication Events in the Brassicales
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Mabry, Makenzie; Brose, Julia M.; Blischak, Paul; Dismukes, Wade; Bottoms, Christopher; Edger, Patrick; Washburn, Jacob; An, Hong; McKain, Michael; McKain, Michael; Barker, Michael; Al-Shehbaz, Ihsan; Schranz, M. Eric; Pires, Joseph. | Brassicales
Genome Evolution
Transcriptomics
phylogeny
polyploidy |
| 361 | Multiple structural types of plastid genomes within a single individual
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Lee, Chaehee; Ruhlman, Tracey; Jansen, Robert. | plastome
multiple genomic configuration
Cyperaceae
repetitive DNA sequences
PacBio SMRT sequencing |
| 488 | New transcriptomic resources and orthologous nuclear markers for the species-rich flowering plant family Acanthaceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | De Morais, Erica Barroso; Schoenenberger, Juerg; Conti, Elena; Antonelli, Alexandre; Szoevenyi, Peter. | Acanthaceae
Lamiales
targeted markers
transcriptomes
phylogeny |
| 639 | Plastome evolution across the phylogenetic backbone of the parasitic plant genus Cuscuta (Convolvulaceae)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Banerjee, Arjan; Stefanović, Saša. | Parasitic Plants
Heterotrophy
plastid
plastome
Cuscuta
Convolvulaceae
Dodders |
| 629 | Plastome sequencing of the last two lineages of parasitic plants: Lennoaceae and Krameriaceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Schneider, Adam; Braukmann, Thomas; Banerjee, Arjan; Stefanović, Saša. | Lennoaceae
plastome
Krameriaceae
parasitic plant
parasitic reduction syndrmoe
Boraginales |
| 935 | Species level variation in Conserved Non-coding Sequences
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Yocca, Alan; Lu, Zefu; Schmitz, Bob; Edger, Patrick. | comparative genomics
evolution
Epigenetics
CNS
Genome Evolution
Pangenomics |
| 530 | Statistically modeling preferentially gene retention after the paleopolyploidy events in the tribe Brassiceae
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Hao, Yue; Colle, Marivi; Edger, Patrick; Pires, Joseph; Conant, Gavin. | polyploidy
biased fractionation
Brassica |
| 829 | Structural organization of chloroplast genomes of five species of riverweeds (Podostemaceae) and comparative analysis in Malpighiales
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Bedoya, Ana Maria; Ruhfel, Brad; Philbrick, C.T.; Madrinan, Santiago; Bove, Claudia; Mesterházy, Attila; Olmstead, Richard. | chloroplast genome
Podostemaceae
Malpighiales |
| 522 | Survey of Viridiplantae for homospermidine synthase-like genes: multiple parallel origins at multiple phylogenetic depths
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Livshultz, Tatyana; Smith, Chelsea R.; Teisher, Jordan. | special metabolism
alkaloids
Gene duplication
paralogy
orthology
parallel evolution
gene trees |
| 671 | The first genome sequence for Penstemon (Plantaginaceae)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Wolfe, Andi; Blischak, Paul. | Whole Genome Sequencing
genome
Penstemon
Penstemon petiolatus genome
Plantaginanceae |
| 771 | The genetic basis of hybrid novelty in monkeyflowers (Mimulus)
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Schlutius, Caroline; Zheng, Xingyu; Matthews, Melia; Cooley, Arielle; Puzey, Joshua. | hybrid novelty
Mimulus
petal lobe anthocyanin
GWAS |
| 111 | The genetic basis of serpentine adaptation in Aquilegia eximia.
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Black, Danielle. | evolution
serpentine
population differentiation |
| 681 | The genome of the desiccation tolerant moss Syntrichia caninervisand its response to abiotic stress
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Silva, AndersoN; Fisher, Kirsten; Bei, Gao; Stark, Lloyd; Mishler, Brent; Zhang, Daoyuan; Oliver, Melvin. | syntrichia caninervis
genome
Desiccation
Transcriptomics |
| 160 | Transcriptome sequencing for development and assessment of genic SSR marker in Ipomoea species
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Unamba, Chibuikem I.N.; Singh, Gagandeep; Singh, Pradeep; Seth, Romit; Agbagwa, Ikechukwu O; Sharma, Ram K. | Transcriptome
SSR marker
Ipomoea
Next Generation Sequencing
Sequencing |
| 811 | Using comparative genomics to uncover the secrets of the serpentine jewelflower: Caulanthus amplexicaulis
Log in to add this item to your schedule | Comparative Genomics/Transcriptomics | Garza, Elyssa; Hawkins, Angela; Pepper, Alan. | genome
serpentine
Caulanthus
Sequencing |
